rs260639827 SNP Detail

Summary

• ID
  rs260639827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:117842217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGAAG ACCTCGGTAG
  AGTTCTCAGC TTTTAAAATA CATTAATTAA CACGTGGGAG TCCAGAAGGA CGCAGAGTTA
  AGGTGGTCTT TGGCATGAGG ACTGGACGCG GAGCCGAGGA AGTTAATAGG TAACAGGGAG
  GGTTCCTGGA CCTCAAATCT CAACTTGGAG TTAGACGGCA GTGGAACGTC CTCCTCCACC
  Y
  AAGCTCAGAG CCACTGCTCC AGCCATCCGG CTGAGGCGGC CAGCCGGGCA CAGAGGCCTC
  CGCTGCCCGC AGCTTTCCTG CCGGACCAGG CCCGGAGGAC ACCCAGGAAG CCGCGCCCGG
  CTCCAGGGAC CGCGGGCCTA GGCCGCGCCT CCCAGTCCCG CGGGCCTAGG CCTCGGCCAG
  CTCCAGGCGA GGCTCGACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372884719	MGP_WTSI_7_125386508	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260639827					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372884719	MGP_WTSI_7_125386508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:117842217 () rs orientation: forward

Symbol	Name	Function Class
4930583K01Rik	RIKEN cDNA 4930583K01 gene	913 bp upstream
Cpgi19616	CpG island 19616	within coordinates
Rr400585	regulatory region 400585	763 bp upstream
Rr654423	regulatory region 654423	within coordinates
Rr654424	regulatory region 654424	581 bp proximal
Rr654425	regulatory region 654425	633 bp proximal
Rr654426	regulatory region 654426	826 bp proximal
Rr654427	regulatory region 654427	1211 bp proximal
Smg1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	within coordinates
Tssr68712	transcription start site region 68712	866 bp upstream
Tssr74428	transcription start site region 74428	368 bp downstream
Tssr74429	transcription start site region 74429	531 bp downstream
Tssr74430	transcription start site region 74430	570 bp downstream
Tssr74431	transcription start site region 74431	675 bp downstream