rs260641237 SNP Detail

Summary

• ID
  rs260641237
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123152653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTC TGTACACATT
  TACAGTCTCC TGAACTATAA TTGACTCGAT GTTTGTGTGT CTTTTCTACA AGAGTGTTGG
  CTGCAAGGGT GCAGGGAATT TTGTCCCTCT TGTGTTTCGA GGCAAGGGCT CACTCCTCCT
  TCAAACTCAT TGTTTTCCAG TCTCCTCTAT GCTGGGACTC CAGGCACGCA TAACATCTTC
  S
  GGATCGACTT TGTCCGTCTC AATCACAAGC CTACACCCTG CCCTCGGTGC CTGGGACCGT
  GTTGGCACCC AATAGACGCT CAATAACCGC TCACTGAACT CTAGTAGCCC TCCGCTTGCT
  CTTTTTTCCA ACAGACCTTT TGCCACCTTG TTCCAAGGAG GAAATAGGCC TCAGGAGGCG
  CCCAGAGGTG ACCTCGGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530682	MGP_WTSI_5_123464599	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260641237					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530682	MGP_WTSI_5_123464599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123152653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	within coordinates
Gm2479	predicted gene 2479	within coordinates
Gm44574	predicted gene 44574	1716 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	484 bp upstream
Rr399336	regulatory region 399336	193 bp upstream
Rr620045	regulatory region 620045	319 bp distal
Rr620046	regulatory region 620046	814 bp distal
Rr620047	regulatory region 620047	within coordinates
Rr620048	regulatory region 620048	806 bp proximal
Tssr48743	transcription start site region 48743	420 bp upstream
Tssr48744	transcription start site region 48744	554 bp upstream
Tssr48745	transcription start site region 48745	690 bp upstream
Tssr48746	transcription start site region 48746	722 bp upstream
Tssr48747	transcription start site region 48747	1639 bp upstream
Tssr53182	transcription start site region 53182	1710 bp upstream
Tssr53183	transcription start site region 53183	250 bp downstream
Tssr53184	transcription start site region 53184	1305 bp downstream
Tssr53185	transcription start site region 53185	1356 bp downstream
Tssr53186	transcription start site region 53186	1379 bp downstream