rs260641789 SNP Detail

Summary

• ID
  rs260641789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:162741638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTTCC CGCAGCTGGT
  CAGCCAGGCG CCGCGGCCTG AGAAAACAGA CCCTCAAAGA GGCCGCCGCA GCCACCGCGG
  CAGACCTGAG TTTTCCTCCC TCGGCCAGTC AGCCAGGCAT CGCGGGCTGA GAAAATGTCT
  CCTCACCGAA GCCGCCCCCC GGAGATCTTC CACCCCCGGA AACTCGTGCC CCAGCTCCTC
  R
  GGGCCTCGCG GGGGCCTTAG CACCGCCCCT TGCCCAGAAT TCAAGGCGTT AAGGCCTAGC
  TCCGCCCCCT CCCATCTAAA TTCCAAGGCG ACGCCTCTAG GTCCCGCCTC TCTCCGCGGC
  TCCACCCATG AGCGCCCCAG ACGAAGTTTA AGAATCCGCT TCCTCTTTGC AAAACCTGCT
  GGCTCTGGTT CCAAAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss405072317	MGP_WTSI_X_160396574	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260641789					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405072317	MGP_WTSI_X_160396574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:162741638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23043	CpG island 23043	within coordinates
Gm38561	predicted gene, 38561	within coordinates
Gm56686	predicted gene, 56686	within coordinates
Rr8437	regulatory region 8437	within coordinates
Tssr162604	transcription start site region 162604	330 bp downstream
Tssr162605	transcription start site region 162605	102 bp upstream
Tssr164522	transcription start site region 164522	510 bp upstream
Tssr164523	transcription start site region 164523	54 bp upstream
Tssr164524	transcription start site region 164524	45 bp upstream
Tssr164525	transcription start site region 164525	24 bp upstream
Tssr164526	transcription start site region 164526	within coordinates
Zrsr2	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	within coordinates