rs260643599 SNP Detail

Summary

• ID
  rs260643599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129228986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGTAGTC GCCTAGGCCG
  GAGACCTGGC GTCGCCTCGC ATCCGCTCCG GAGGAGCTGC TGCGCCGTTA GCCCGCCCCG
  CCGGGGAGCT CAGTCCTCAG GCCGGCGTCG CTGGGACGAG GCTCGCCAGA GTCGGGCCTG
  CTCTCCGTCT CAGGCCGCGT AACAGGCCAC GACACAGCCC TACAAGCCAG CACCGTCCCT
  Y
  CCGAGCCGGC CTCGGCACAC TCACCTTCCT TGTCAGCCAT GGCGGCAGGA GAGCCGGGAG
  GGGTTGGGGG ATCCCGGGGT CGTGCGTTGC AGGAGGGGCG GGGAGGCTAC GAGCGCTCCA
  CTCCGCGCGC GCGGCCTCTA TTGTTTCCTG CGGCCCGTGC GTAGGGGGCC GGCTCGCGTG
  CCTTCGCGCC AACACCGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312040	CHEV_4_129012437	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260643599					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129228986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	within coordinates
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	166 bp upstream
Rr367702	regulatory region 367702	614 bp upstream
Rr600200	regulatory region 600200	128 bp proximal
Rr600201	regulatory region 600201	167 bp proximal
Rr600202	regulatory region 600202	1548 bp proximal
Tssr39141	transcription start site region 39141	400 bp upstream
Tssr39142	transcription start site region 39142	769 bp upstream
Tssr39143	transcription start site region 39143	823 bp upstream
Tssr43492	transcription start site region 43492	50 bp downstream
Tssr43493	transcription start site region 43493	104 bp downstream
Tssr43494	transcription start site region 43494	131 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	339 bp upstream