rs260646603 SNP Detail

Summary

• ID
  rs260646603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129473842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC ATCACATGTG TATACACACA
  Y
  GGGTGTATAG ATGAGTTAAA AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355643491	MGP_WTSI_2_129457658	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260646603					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355643491	MGP_WTSI_2_129457658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129473842 () rs orientation: forward

Symbol	Name	Function Class
Rr564962	regulatory region 564962	1053 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1929 bp downstream
Tssr20163	transcription start site region 20163	1899 bp downstream
Tssr20164	transcription start site region 20164	1845 bp downstream
Tssr20165	transcription start site region 20165	1822 bp downstream
Tssr20166	transcription start site region 20166	1788 bp downstream
Tssr20167	transcription start site region 20167	1723 bp downstream
Tssr20168	transcription start site region 20168	1589 bp downstream
Tssr20169	transcription start site region 20169	1495 bp downstream
Tssr20170	transcription start site region 20170	1336 bp downstream
Tssr20171	transcription start site region 20171	1322 bp downstream
Tssr20172	transcription start site region 20172	1254 bp downstream
Tssr20173	transcription start site region 20173	1206 bp downstream
Tssr20174	transcription start site region 20174	1008 bp downstream
Tssr20175	transcription start site region 20175	993 bp downstream
Tssr20176	transcription start site region 20176	961 bp downstream
Tssr20177	transcription start site region 20177	643 bp downstream
Tssr20178	transcription start site region 20178	410 bp downstream
Tssr26273	transcription start site region 26273	1920 bp upstream
Tssr26274	transcription start site region 26274	1848 bp upstream
Tssr26275	transcription start site region 26275	1271 bp upstream