rs260647248 SNP Detail

Summary

• ID
  rs260647248
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17839539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCAGCAA TAAGCACATT
  TGACGATTGC TCATACCATT TGGAAGCCAG TGCTCACATG ACGAACTGGC CTGACACCTC
  ATCCATCAGC AGGGTGCCCT CAGCAGAGTG GACAGTCTTC CGTGCACCAT CTCGAGTGGA
  GGCCCAGCTG GGAAACAGCC TTCTTTTCCG ATAGCAATTA GATCTTTAAG ATCAGACCTT
  M
  GCAATTTGAC CTAAAGCCAT CCTTCCTTGC AAAGTCTTCG GAAGAAAAGA CAAGGAAATA
  GGCAAATGAG AAATGCAAGT CTCTCTGGCC TGATTAAAAA CTTTGTTGTG TCAAATAAAC
  TTTGGCCACC GGAGGAAAGA ACCCTATGGT TGCTCTGGTT TGAGAAAGAT CTGTCCCAGG
  GCTCTCAATC TTCTCTTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118578	MGP_WTSI_3_17685375	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260647248					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118578	MGP_WTSI_3_17685375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17839539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	653 bp proximal
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Gm66000	predicted gene, 66000	1965 bp downstream
Rr573837	regulatory region 573837	968 bp distal
Rr573838	regulatory region 573838	within coordinates
Rr573839	regulatory region 573839	227 bp proximal
Rr573840	regulatory region 573840	555 bp proximal
Rr573841	regulatory region 573841	674 bp proximal
Rr573842	regulatory region 573842	972 bp proximal
Rr573843	regulatory region 573843	1753 bp proximal
Tssr32672	transcription start site region 32672	59 bp upstream
Tssr32673	transcription start site region 32673	151 bp downstream
Tssr32674	transcription start site region 32674	193 bp downstream
Tssr32675	transcription start site region 32675	232 bp downstream
Tssr32676	transcription start site region 32676	932 bp downstream
Tssr32677	transcription start site region 32677	1459 bp downstream