rs260654093 SNP Detail

Summary

• ID
  rs260654093
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12938865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGCTG CCGGGGTTGG
  GGGTCGCCCC GAGCCCCGGC CGTCGCGGGC GCGCGCGAGC CTCCGTGGTG CGCGCGGCCG
  GCGTCCCGCG AGCGTGTGTC CGTGTCCGTG AGTGAGCGTG GCGCTGTGTG TGCGTGTGTG
  TTTTGGACTG GCAGGGAAAA TGGCTGACGG CTCCGGCCCT CCCCCTTCCT CCCCCTTCCC
  K
  GCCTGACGGG AGTGGAGAGG AGGAGGAGGA GGAGAAGGAG GAGGATGGAG ACTCCGGCGC
  GCCGTGCCGC CCCTCCACCC GCGCGGGAGG TCGGTCGGGA GCGCGCGGGG GCGCGGGCAC
  GGCGCGGGCG GGGGCGGGGA CGGTTGGTTC GCGCGCCCCT TAACCCGGCG GCGGACGCCC
  TCGGCCTGTT CCACTTGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403087109	MGP_WTSI_X_12649752	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260654093					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403087109	MGP_WTSI_X_12649752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12938865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22632	CpG island 22632	within coordinates
Gm61952	predicted gene, 61952	698 bp upstream
Gm61953	predicted gene, 61953	1272 bp downstream
Rr406088	regulatory region 406088	1025 bp downstream
Rr690196	regulatory region 690196	1102 bp distal
Rr690197	regulatory region 690197	1287 bp distal
Rr690198	regulatory region 690198	709 bp distal
Rr690199	regulatory region 690199	208 bp distal
Tssr160578	transcription start site region 160578	1544 bp downstream
Tssr160579	transcription start site region 160579	1457 bp downstream
Tssr160580	transcription start site region 160580	1329 bp downstream
Tssr160581	transcription start site region 160581	1127 bp downstream
Tssr160582	transcription start site region 160582	1050 bp downstream
Tssr160583	transcription start site region 160583	963 bp downstream
Tssr160584	transcription start site region 160584	587 bp downstream
Tssr160585	transcription start site region 160585	557 bp downstream
Tssr160586	transcription start site region 160586	180 bp upstream
Tssr163012	transcription start site region 163012	697 bp upstream
Tssr163013	transcription start site region 163013	59 bp upstream
Usp9x	ubiquitin specific peptidase 9, X chromosome	within coordinates