rs260655080 SNP Detail

Summary

• ID
  rs260655080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165667500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATCAGT TTGGCCTCTT
  CTTTGCTGGT CCATTCTTCT GACATCATAG GCAGAACCTA GGTCAGGGAA GCAGCGCCAA
  GGACACTAGA GCAAAGACTG TATCCCCAAG CAGGAGCTGA CATGTCTACC AGGGGCTGAC
  ATGTCTACCA GCAGGGGCTC AAAGACAAGG AAGGGGCTGA TTCCCAAGCT GGGACTGCCC
  R
  GCTGGGCCCA GGCTGTTTGA GGAGGAGTTC GCAATGCTGA CTGGGGATTT CAGAACAGCC
  ATAAACTGGA CTTAGACCTT GTCCTGGGAA GTAAAAAGAG AACGTCAAGA TCTGAGGGAG
  TAAGACACAT CAGCCTCTGC ACCATCAGCC TCTCCACCAT CAGCTTCTGC ACCATCATCA
  GCCTCTGCAC CATCAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352251250	MGP_WTSI_1_167770062	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260655080					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352251250	MGP_WTSI_1_167770062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165667500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd247	CD247 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi956	CpG island 956			948 bp proximal
Gm71096	predicted gene, 71096			within coordinates
Gm71107	predicted gene, 71107			1128 bp upstream
Rr422481	regulatory region 422481			1698 bp distal
Rr422482	regulatory region 422482			410 bp distal
Rr422483	regulatory region 422483			727 bp proximal
Rr422484	regulatory region 422484			1013 bp proximal
Rr422485	regulatory region 422485			1139 bp proximal
Tssr268	transcription start site region 268			1003 bp downstream
Tssr269	transcription start site region 269			33 bp upstream
Tssr9850	transcription start site region 9850			1255 bp downstream
Tssr9851	transcription start site region 9851			1125 bp upstream
Tssr9852	transcription start site region 9852			1738 bp upstream