rs260655721 SNP Detail

Summary

• ID
  rs260655721
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCCAAG CGCCACCTCT TCTCGCTCAT
  CCGAGAACTT TGAACCCCGC CCTGAACGCA AGGTGATCGG CGCAGAGACA AGAGGGCAAA
  GCTGTGCGCA TTCTCGTTTT TATTTCATTG TTGACCCGGT GGCGGCGCCT TTGAGTGGAA
  K
  CCGAAGTCAG GAACGCGAGG TGCGCAGGGG AGCAAGGAGG GGCCTTTTGT GTTACTTCTC
  TCGGCTAAAC ATGTAGCGGA GGAGGTCGAC CACTCGGTTA CTGTAGCCAT ATTCGTTGTC
  GTACCTGAGG AGGCGAGGAA GGAGGCGTCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322136280	CHEV_7_31514854	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260655721					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	mRNA-UTR
Rr400253	regulatory region 400253	within coordinates
Rr644901	regulatory region 644901	919 bp distal
Rr644902	regulatory region 644902	846 bp distal
Rr644903	regulatory region 644903	196 bp distal
Tmem147	transmembrane protein 147	301 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	192 bp downstream
Tssr65803	transcription start site region 65803	76 bp downstream
Tssr65804	transcription start site region 65804	29 bp downstream
Tssr65805	transcription start site region 65805	1339 bp upstream
Tssr71842	transcription start site region 71842	998 bp upstream
Tssr71843	transcription start site region 71843	382 bp upstream
Tssr71844	transcription start site region 71844	334 bp upstream
Tssr71845	transcription start site region 71845	279 bp upstream