rs260656979 SNP Detail

Summary

• ID
  rs260656979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACTGA GGTGTAAATA
  GAAGGCTAAT GTTATGCATG TCTATGCAGT CCACCATGCG GTCCTACCCA CCACTGACCC
  ACCATCGTCT GGGCTTCAAC CTCAACCTGT GGTCGCCCAA GCTCTTAGAG CCGTGTGAAA
  TCCTATTCAG GGACACGCTA ACCATTGGTT GGCATCTTTT CCCTTTCCCA GCATGAGATT
  Y
  CTAGGGGGAG ATTCCCCTTT CTTTGTGCTT CATTGTCCCA ATAATCGGAC AGATAGGTTG
  AGACACTTAG CTTATCTTCC CTTCCTCCTG TGGGGTCTGG GATGGAACAC CGTTTGGTGG
  CACATCTGGG CCTCTCATTT GCCAGTTTTT AATTCTTATC TGCTGTCCTT AAAATCCCTA
  ATTGGCCTTT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371173047	MGP_WTSI_7_52495646	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260656979					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371173047	MGP_WTSI_7_52495646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889700 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1161 bp upstream
Cpgi19038	CpG island 19038	294 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	809 bp upstream
Tssr66503	transcription start site region 66503	798 bp upstream
Tssr66504	transcription start site region 66504	833 bp upstream
Tssr72351	transcription start site region 72351	1520 bp upstream
Tssr72352	transcription start site region 72352	1412 bp upstream
Tssr72353	transcription start site region 72353	1210 bp upstream
Tssr72354	transcription start site region 72354	1173 bp upstream
Tssr72355	transcription start site region 72355	1143 bp upstream
Tssr72356	transcription start site region 72356	989 bp upstream
Tssr72357	transcription start site region 72357	981 bp upstream
Tssr72358	transcription start site region 72358	956 bp upstream
Tssr72359	transcription start site region 72359	926 bp upstream
Tssr72360	transcription start site region 72360	889 bp upstream
Tssr72361	transcription start site region 72361	866 bp upstream