rs260661867 SNP Detail

Summary

• ID
  rs260661867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5744760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTGTGC GGACTGGAAG
  GTGAAGCCGA GTCAGGAGAC CAGCGTGCCT GCGGAGAGCT GCAGTGGCCT TGGAGCATCC
  AGGGTTCGCT GAGCTGTGTA AGGGCACCTT GCTTTCTCTA ATCCCCCCCC CCCCCGATTT
  TGGATTAACA AGTAGATGGG GATCTTTTAT TTACCTTTTT AGTCAAAAGT GTCAGTGGAG
  W
  TTTTTTTTTA ATATAAAACC AATTTGTCGA AAATTGTCAA ATTTACTTCC CCCACCCTCA
  GACGTTAGTA AATTCTCATT TCAGCAAATT AGGTTTAAAA ATTATCTTTC TTGGTGGTTT
  ATTAACTAGA CAAATCAGAA CAAAAGCAGA AGAGGGTCTT AGATCGATCC TCAGGGCACT
  GCACTTTCCC CTTTGAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363869366	MGP_WTSI_5_5694760	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260661867					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363869366	MGP_WTSI_5_5694760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5744760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	54 bp distal
Gm40262	predicted gene, 40262	within coordinates
Rr607034	regulatory region 607034	719 bp distal
Rr607035	regulatory region 607035	203 bp distal
Rr607036	regulatory region 607036	within coordinates
Steap2	six transmembrane epithelial antigen of prostate 2	182 bp upstream
Tssr50064	transcription start site region 50064	651 bp upstream
Tssr50065	transcription start site region 50065	448 bp upstream
Tssr50066	transcription start site region 50066	313 bp upstream
Tssr50067	transcription start site region 50067	269 bp upstream
Tssr50068	transcription start site region 50068	221 bp upstream
Tssr50069	transcription start site region 50069	179 bp upstream