rs260666073 SNP Detail

Summary

• ID
  rs260666073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAAGCTA GGTAGGGCAC
  GGGGATTGAA GGAGAGACCG TGATGAGGGT GGAGGGACTC CAGGGGACTG CAGCCTGGCC
  TGTGCCTTGC ACCATGAATG TGCACAGGAA AGCCAGGGTG GTGGCACATG CTTGAGATTC
  CAGCACCTTC CAGGTAGAGG CAGGAGGATT AGAAGTTTAA AGTTGTCCTC CCTTATGTAG
  Y
  CAGTTCTAGG TCAGCCTGGG CTACATGAGA CCCTGGCTGG AAAAACTATT TTTCGAGCAC
  CAAACTGAAA GGGGACACAA TGACTATCAA GACCCTCAAA GCAGCGGGCC TTCAACCTCG
  CAGGGACCTT AGAGCCTAGG AGTGGACTTT GGAGTCCTGC AGACCCTCTC TGGCCCCAGC
  CAGTCCCATA AGGCTTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318855	CHEV_4_130376387	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260666073					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547783 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1866 bp downstream
Tssr39266	transcription start site region 39266	1844 bp downstream
Tssr39267	transcription start site region 39267	1825 bp downstream
Tssr39268	transcription start site region 39268	1795 bp downstream
Tssr39269	transcription start site region 39269	1758 bp downstream
Tssr39270	transcription start site region 39270	1729 bp downstream
Tssr39271	transcription start site region 39271	1684 bp downstream
Tssr39272	transcription start site region 39272	1668 bp downstream
Tssr39273	transcription start site region 39273	1613 bp downstream
Tssr39274	transcription start site region 39274	1571 bp downstream
Tssr39275	transcription start site region 39275	1555 bp downstream
Tssr39276	transcription start site region 39276	1519 bp downstream
Tssr39277	transcription start site region 39277	1502 bp downstream
Tssr39278	transcription start site region 39278	1491 bp downstream
Tssr39279	transcription start site region 39279	1708 bp upstream
Tssr43599	transcription start site region 43599	1763 bp upstream
Tssr43600	transcription start site region 43600	1720 bp upstream
Tssr43601	transcription start site region 43601	1553 bp upstream