rs260666295 SNP Detail

Summary

• ID
  rs260666295
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtttctct gtgtatccct ggatgtcctg
  gaactcactt tgtagaccag gctggcctcg aactcagaaa tccacctgcc tctgcctccg
  gagtgctggg attaaaggcg tgcgccatca ctcccggctt tacatggctt ctgaggactt
  S
  aactcatgtc ctcttccttg tgtggaaaac actttaaaca ctaagtgatc ttgctagctc
  AGTGCTTATT GTTTTGTTCT GTTTTTTTTT TCCTCCAatt gtatgtgcat gaacgtttcg
  ttttgcccgt cattgtgtag ctatacatat                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068147	CHEV_1_154637294	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260666295					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665915 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	69 bp proximal
Rr420542	regulatory region 420542	172 bp proximal
Rr420543	regulatory region 420543	296 bp proximal
Tssr9422	transcription start site region 9422	1731 bp upstream