rs260669467 SNP Detail

Summary

• ID
  rs260669467
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCATGTG CTGATCTCGA
  AGACCAAAGT TACCTGAGGG TGAGGGGAGA GCCTTCATCA GGAGGGCCCC CAACTAAAGC
  TGGAGGAGGT TAGAGATTGG TGACCTAGAG ATTAACAGTC AATGTGCCCA TTCCCAGGAG
  GGCAAATGGT AGATCTTCAG GAGGCTGAGT TTAAAGGGGA GTAGCGGTGG GATGGGGGTG
  S
  GGAGTGGGTC AGGAAGGTGG GAGGCGTGGG AGGCACAGCC ACCAGTGGCT CGGCCTGACT
  CCATTCTGCA CATTTCCTCC TACTGTCTGT CTTCCCTTTG GCATCTTTCC TATGGTATCT
  TTTCAGGGCT CAACTTGAAT CTCTGCCATT CTGTCTGTTT CTTGGCCTCT CTCATTTCCC
  GGCGGCTGCC TCAGGCTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478959	MGP_WTSI_2_28415644	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260669467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478959	MGP_WTSI_2_28415644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450136 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	642 bp proximal
Tssr16963	transcription start site region 16963	430 bp upstream
Tssr16964	transcription start site region 16964	824 bp upstream
Tssr23262	transcription start site region 23262	729 bp upstream
Tssr23263	transcription start site region 23263	687 bp upstream
Tssr23264	transcription start site region 23264	485 bp upstream
Tssr23265	transcription start site region 23265	443 bp upstream
Tssr23266	transcription start site region 23266	262 bp upstream
Tssr23267	transcription start site region 23267	232 bp upstream
Tssr23268	transcription start site region 23268	397 bp downstream
Tssr23269	transcription start site region 23269	463 bp downstream
Tssr23270	transcription start site region 23270	534 bp downstream
Tssr23271	transcription start site region 23271	1056 bp downstream
Tssr23272	transcription start site region 23272	1080 bp downstream
Tssr23273	transcription start site region 23273	1110 bp downstream
Tssr23274	transcription start site region 23274	1140 bp downstream
Tssr23275	transcription start site region 23275	1204 bp downstream