rs260671658 SNP Detail

Summary

• ID
  rs260671658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34875636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGACAC TTGTCAGGGC
  TCCTTCCACT GTGGCAAGGA CCAGGGTATC TCTTGGTGGC CCCGGGGCAT GAACAGAAGA
  ACCTGAAGTC TCAGTGGCAC CACTAATGAT AGCTTGCCCT GCCAAACAAG CCTTCCTTGT
  TCAGGGCAGA ATCCAGGCCA TGAGCTTATC AACAACAAAC AACAAAACAA TAACAACAAC
  R
  CCAAGTTCTG GGTGGCACAA TGGAATTTAT TTGTCTTTGT GAGGCACACA TAGTAATTAA
  CACATAAAAG AACACACACA CACAGTCAAA AAGGACATGT GTAGTGCAGG AAATGACTGG
  TCCCAGGTCA ATTACACAAA TGCTAATGCT CTGCAGAAAT GAGTCTTTTT CTAATACTTT
  AATTTTTTTT TTTTTAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393615117	MGP_WTSI_15_34805245	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260671658					SNP	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393615117	MGP_WTSI_15_34805245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34875636 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	9 bp downstream
Tssr133982	transcription start site region 133982	720 bp downstream
Tssr133983	transcription start site region 133983	840 bp downstream