rs260673951 SNP Detail

Summary

• ID
  rs260673951
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88134034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCACGGTGG TCCCTGCACT CCGCGTGTTC ATGTCGCCCA
  GTTACCGCCA GACATGAAGT TTGCTGGCTC ACGGATTTGA GACAGCCTAG TCTGCAGAAT
  T
  AGGAGAAGAA ATTCCTGCTG TTTGTTACCC ACCCAGCTCA TGACACGTTG CTATTGTAAC
  TGAGTGGACC AAGACACTGA CTGCACGGGC ACCTTGGAC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500234	CHEV_17_88225946	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260673951					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88134034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9633	CpG island 9633	34 bp distal
Cpgi9634	CpG island 9634	380 bp proximal
Gm50039	predicted gene, 50039	within coordinates
Rr532768	regulatory region 532768	within coordinates
Tssr146214	transcription start site region 146214	681 bp downstream