rs260675726 SNP Detail

Summary

• ID
  rs260675726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:68800362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACGAGG CGGCGCGCGC
  CGGGCGGTCA GCATAGCGCG CAGGCGCGGC GGGCGGGGCG GGGAGGGCGC GGGGCACTGC
  GCGGCGGCTC AGAGCGCGCG GGGTGGCGCG CGGGGCGGGT CGTGGCAGAG CAAGGCATCG
  TCGCAGCCGG CGAGCAAGAC TGGCCAGCGC TCCTCGGCTT TCCAGCCCGC TCTCTTCGCT
  Y
  ATCCCGCCGC CTTGCAGCCC GCGGCCCGCA GCGCGGTGAT CTGGGGCTCC ACGGGGCCGG
  GCTGAGCGGC CGCCGCCCGC CCCGAGCCGC CGCCGCCGCC CGGCCGCCCG CCCGGCTTAG
  CCGCCGAGGC GCCTGGCGGG GTCCGCGCCG CCGGGGGCGG GCGGCTCGGG CTGCGGGGCG
  GCTGGCGCGC GCGCGCCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss394433429	MGP_WTSI_15_68758943	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260675726					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394433429	MGP_WTSI_15_68758943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:68800362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7148	CpG island 7148	within coordinates
Khdrbs3	KH domain containing, RNA binding, signal transduction associated 3	within coordinates
Rr503804	regulatory region 503804	within coordinates
Rr503805	regulatory region 503805	181 bp distal
Rr503806	regulatory region 503806	195 bp proximal
Tssr131505	transcription start site region 131505	120 bp downstream
Tssr131506	transcription start site region 131506	104 bp downstream
Tssr131507	transcription start site region 131507	92 bp downstream
Tssr131508	transcription start site region 131508	61 bp downstream
Tssr131509	transcription start site region 131509	30 bp downstream
Tssr131510	transcription start site region 131510	190 bp upstream
Tssr131511	transcription start site region 131511	846 bp upstream