rs260677303 SNP Detail

Summary

• ID
  rs260677303
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59653043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTCCAG GGCCTTAAGA
  AAGGGTGTGG CTGAAATTCC AACACCGCAG AAATGACAAG TGCTGTTATC TCCTTAGGTT
  TGTAGCATAA TGGGGAGGGG TCTACTGCCC TGTATACGCC ATGCTGCGCC TGCGCACTTC
  AGCACCTCTG CAGCAGCGGC CATCTTTACA GATCCTCACA ATGGCGTTTG ACATGCGACA
  S
  GACCCCTTGA TAATACCAAG ATGACTTTGA TAAAATTCAG GATGCCATGA AAAAATAAAA
  GACATTGTCT TATTACCTCT ACTCAATGAG TGGGTAAAAG CAAGTATTGC ATAGACTTCA
  TACACTAACC CCCACTGTGA GGGGTGGTTG ACAGTGACAC AACAAGAAAA TGGAACACTG
  AGACTTGCAT CCCTATCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371553178	MGP_WTSI_7_67148181	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260677303					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371553178	MGP_WTSI_7_67148181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59653043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1013 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	369 bp upstream
Rr346	regulatory region 346	1745 bp proximal
Rr647544	regulatory region 647544	within coordinates
Rr647545	regulatory region 647545	380 bp proximal
Rr647546	regulatory region 647546	1744 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	1878 bp downstream
Tssr66968	transcription start site region 66968	394 bp upstream
Tssr66969	transcription start site region 66969	1126 bp upstream
Tssr72702	transcription start site region 72702	300 bp upstream
Tssr72703	transcription start site region 72703	205 bp upstream
Tssr72704	transcription start site region 72704	139 bp upstream
Tssr72705	transcription start site region 72705	109 bp upstream
Tssr72706	transcription start site region 72706	671 bp downstream
Tssr72707	transcription start site region 72707	1784 bp downstream
Tssr72708	transcription start site region 72708	1806 bp downstream
Tssr72709	transcription start site region 72709	1857 bp downstream