rs260679672 SNP Detail

Summary

• ID
  rs260679672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62442839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCGTGG TTATTTCAGT
  GGGGGGAGGC AGAAAAGAGG TACTTCTCAC TCGGGCATTG TTTATTACTT GAATTTTTAT
  CGATGGCTTC TGGTCTGGAT ATTTTTTATT TTCAATTTAT CATGTCTATT GTTAGCGAAC
  TTGGATGCCC CGCAGTTGAT GAATGTTCCA AATGCCAGTT TAGTGTTTTG GAAAGGTTTA
  R
  CAGTTTGAAA CCATGACAAA ACAGGTTTTA TGTTATGACA AAAAGGGGAG GAGTTTTGAG
  TAGAAGTATT TTGTAGGGAA TCGAAGATTT TAGTAGGCTT TTAAATTTTT ACCTTTTAAA
  TTCAAGGTCA AAATGCAGAT CTTCGTGAAG ACCCTGACCG GCAAGACCAT CACCCTAGAG
  GTGGAGCCCA GTGACACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383609426	MGP_WTSI_11_62365515	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260679672					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383609426	MGP_WTSI_11_62365515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62442839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	68 bp distal
Gm12279	predicted gene 12279	917 bp upstream
Gm71785	predicted gene, 71785	983 bp downstream
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	738 bp downstream
Tssr102022	transcription start site region 102022	1468 bp downstream
Tssr102023	transcription start site region 102023	1413 bp downstream
Tssr102024	transcription start site region 102024	1156 bp downstream
Tssr102025	transcription start site region 102025	822 bp downstream
Tssr102026	transcription start site region 102026	767 bp downstream
Tssr102027	transcription start site region 102027	728 bp downstream
Tssr102028	transcription start site region 102028	556 bp downstream
Tssr102029	transcription start site region 102029	536 bp downstream
Tssr102030	transcription start site region 102030	510 bp downstream
Tssr102031	transcription start site region 102031	278 bp downstream
Tssr102032	transcription start site region 102032	274 bp downstream
Tssr102033	transcription start site region 102033	243 bp downstream
Tssr102034	transcription start site region 102034	192 bp downstream
Tssr102035	transcription start site region 102035	154 bp downstream
Tssr108430	transcription start site region 108430	1033 bp upstream
Tssr108431	transcription start site region 108431	994 bp upstream
Ubb	ubiquitin B	within coordinates