rs260680264 SNP Detail

Summary

• ID
  rs260680264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116026339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCCTC CTCCTTCTTT
  ACATCCTTTT GCCTGCATAT CTCTGATGTG TGAGCCTGGT TCTTACGGAG TTCAGAGCAG
  CCCATCAGAT CCCCTGGAGT CCTGGAACTG AAAGTTAAGG AGGCAGTGAG CCACCATGTG
  GGTGCTGGAA ATCAAACCAA GGTCCTTTGC AGCCTCAACC ACTATGTCAT TTCTCCAGCC
  M
  CCCCCCCCGC CCCCCCCCCA CTCTTCTTTT CCCCCTCTCC ATATTCTGGA ATCCAGAGTA
  TGGCCCTGGT CATTCTGCCA GCAGGTGGCA CTATGGGCCT ACAAAGGAGA CACTATCACC
  CCAAGGTTCT GTAACCCTTC TTTTCTGGGG CTCCCTCTTT GTTTTCCTAC TCCAAGCTTC
  CTGGTTGAGA GGTTCTTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362944931	MGP_WTSI_4_115841747	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260680264					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362944931	MGP_WTSI_4_115841747	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116026339 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	1139 bp distal
Rr84350	regulatory region 84350	739 bp distal
Rr84351	regulatory region 84351	within coordinates
Rr95993	regulatory region 95993	1042 bp proximal
Rr101863	regulatory region 101863	1139 bp distal
Rr101864	regulatory region 101864	within coordinates
Tspan1	tetraspanin 1	1541 bp upstream
Tssr42870	transcription start site region 42870	1563 bp upstream
Tssr42871	transcription start site region 42871	1535 bp upstream