rs260680392 SNP Detail

Summary

• ID
  rs260680392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGAATT ATCTGTAGTA
  GGGTGCACGG CTATTATTTA ACAAGTTTGA TGTGGTGTGG GTGGCTTCCA AAGTAAATCT
  TAAGAAGCAG TGCCTGTTCT TGAACGCATG ATTACTAATC TGCCTCTTAG TCTTACCCAT
  CACTACTCAT GCGGTCTTAC ATTATTGAAG GCTGTTCCAA TTCTCTGTTT CAGTTATCTG
  K
  TTTGAAAAGT GAGCAGGGCA ATAATATATA CAAGGCTTGC TTGTCTTCTA ACTTCTTCTT
  TTTCTACAAG AATGATGCAT TTCCATTTGT CCCACCCCTC AGGGATGCCA GAGGAAGAAT
  GAATCAACAT CTGGACAGTT GAGCAATAGC TAACTCTACT AACTGTATTT TGTTTTCTGC
  ATATTATGGT ATTCTGGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072565	MGP_WTSI_11_83390646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260680392					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072565	MGP_WTSI_11_83390646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467970 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1482 bp proximal
Rr452991	regulatory region 452991	1861 bp proximal
Tssr103716	transcription start site region 103716	1778 bp downstream
Tssr109686	transcription start site region 109686	1966 bp upstream
Tssr109687	transcription start site region 109687	1912 bp upstream
Tssr109688	transcription start site region 109688	1871 bp upstream
Tssr109689	transcription start site region 109689	1829 bp upstream
Tssr109690	transcription start site region 109690	1820 bp upstream
Tssr109691	transcription start site region 109691	1806 bp upstream
Tssr109692	transcription start site region 109692	1778 bp upstream
Tssr109693	transcription start site region 109693	1661 bp upstream
Tssr109694	transcription start site region 109694	1234 bp upstream
Tssr109695	transcription start site region 109695	1186 bp upstream
Tssr109696	transcription start site region 109696	190 bp upstream
Tssr109697	transcription start site region 109697	within coordinates
Tssr109698	transcription start site region 109698	1276 bp downstream
Tssr109699	transcription start site region 109699	1323 bp downstream
Tssr109700	transcription start site region 109700	1352 bp downstream
Tssr109701	transcription start site region 109701	1385 bp downstream
Tssr109702	transcription start site region 109702	1442 bp downstream
Tssr109703	transcription start site region 109703	1452 bp downstream
Tssr109704	transcription start site region 109704	1476 bp downstream