rs260683340 SNP Detail

Summary

• ID
  rs260683340
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141388856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCTTT CTCTGAGAAG
  ACTATCAGTC TGCCAAGGCT TAGTGAGGGC CTCCCAGTCT CTACCAACAC AGAGTCTTCT
  GGAAGACAAC GGCTGCTGTT TAAAAGGTTC CTTGTGTGTT GGTGCAGGGA GACACGCACA
  CAGGCATGCA GCGCTGGTGT ACAGGCGGTA GTTAGCCACT CAGCTTAGGA GCTAGGACCC
  C
  GACTTAGATT CTCTGGAAAA GAGGCCAGTG CTCTTAGCCA CTGACCTGGC TATCTGTCCA
  GCAGCATTTT TTTTTGTTTT GTTTTGTTTT GAATTTACTT TTTCCATCGT GAGTTCTGGA
  GATTGAACCC AAGTCATCCA GTTTGCACAC CAACTCTGGC TTGCAAGCCA GTTTCCCTGC
  TTTGGCCATC TTACCAGGTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388822	CHEV_4_141217460	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260683340					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141388856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	1639 bp proximal
Gm70264	predicted gene, 70264	507 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603849	regulatory region 603849	1591 bp distal