rs260686437 SNP Detail

Summary

• ID
  rs260686437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32387341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGATACA CTTTTTAAAG
  ATTTATTTGT GTGTGTGTGT TTCTCTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGCACTAGT GTGAGTACCT GCATATGCAG AGACCAGGGA AGGCACTGCA
  CCCCTCAAAG CTGGAGTTAT GGTCATTTGT GGAATAGCCA GCTTGTTACA TGAGACAACT
  R
  GAATCTGAAA TCAGATCCTC CTGCTGCTGC TGCTGCTCTC TTAACAACTG AACAGTCTTT
  CAGGCCCACT TCGTTGTTGT CCTACTTTGG GGGCTTCTCC TTTTCAGGCA GAGTCTCGTG
  CAACCCAGAC TGGCCTTGAA CTTACTGAAA CCAGAATGAC CTAGAAGTCC CAGTCTTCCT
  GGCTTTGCCT CCCAGTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361637	CHEV_17_32305312	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260686437					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32387341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8965	CpG island 8965	1236 bp distal
Notch3	notch 3	1515 bp upstream
Rr334850	regulatory region 334850	1060 bp proximal
Rr339597	regulatory region 339597	940 bp distal
Tssr147344	transcription start site region 147344	1595 bp upstream
Tssr147345	transcription start site region 147345	1469 bp upstream