rs260696139 SNP Detail

Summary

• ID
  rs260696139
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115090213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGCCT GAGGGGACCC
  TGACCAAGAA GCTCTGTTGC TTCTATCACC CACGTGCTCT CAGGTGATCA GGAGTTCCTG
  GGTGTGCAAG GGGTCCTGTG GTTTGGAGAG TCCTCTGGTG CCCTAGATGC CCTCAGCTGG
  GTTCATGCAG AAGATGGCCA GACTGGCCCC AACCTGAATG GATCCCAGCC TCTGGTCTGG
  C
  AAAGTTCTCT TGTCTCTGTT CTTGCTTTCA CAAGACCCTC CGAGATTCTT TGACACTGGT
  GTTGCTTTCC ACTCACCTGT GCTAATGAGG TGATCCCGAG GTCCTGCAGC ATGGAGAGCA
  CTCTGGATCC CTTAGTAGCC CCTGCTGGGC TCAGAAGGAA GATGGTGGGA GTGGTCCCAA
  CTAGAATGGA CCCCAATCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
ss387453562	MGP_WTSI_12_116364804	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
rs260696139					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387453562	MGP_WTSI_12_116364804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115090213 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Rr387812	regulatory region 387812	1124 bp upstream