rs260698399 SNP Detail

Summary

• ID
  rs260698399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83534140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTGAGA TTCGATGACT
  TTTGCAAGCC CTCCTCCGCC CTTTGTTGTG TTGGACCCTC TCCTGTGGGT GGGTTTCCGT
  GAAACAGTGA AAAGGAGCTC TGATCACGCT TGAGTCCCCA CAGCTTGTTT GACTCAGTGA
  TAGACCCTCC CTGAGGTTGG TCTTACCCCC CCCCCCCCCA GCCGTTTAGG AGTTGTGTGA
  Y
  CTTGGGCAAG TTTTCTCTCC CAAGTTACTG TAGTCAGGTA GTGTATGGTG ACCTCGGTTC
  CAGCTGGCTA GAATTCCAAT GTGCCTTGAT CAGCAGTTCG CCCTTTCCTG ACTCCATCTA
  TATAATGGAA TAATAGCAAC CATTGTTAAG TAAAGAGCCA GTCTCTGGAG GTAAACACTG
  TTATCTCTGG GTTACAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372126318	MGP_WTSI_7_91033442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260698399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126318	MGP_WTSI_7_91033442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83534140 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	within coordinates
Cpgi19376	CpG island 19376	111 bp distal
Mesd	mesoderm development LRP chaperone	within coordinates
Rr158447	regulatory region 158447	1661 bp proximal
Rr168144	regulatory region 168144	within coordinates
Rr400419	regulatory region 400419	356 bp downstream
Tlnrd1	talin rod domain containing 1	591 bp upstream
Tssr67581	transcription start site region 67581	1287 bp downstream
Tssr67582	transcription start site region 67582	1264 bp downstream
Tssr67583	transcription start site region 67583	1192 bp downstream
Tssr67584	transcription start site region 67584	1051 bp downstream
Tssr73402	transcription start site region 73402	1462 bp upstream
Tssr73403	transcription start site region 73403	1362 bp upstream
Tssr73404	transcription start site region 73404	1102 bp upstream
Tssr73405	transcription start site region 73405	762 bp upstream
Tssr73406	transcription start site region 73406	679 bp upstream
Tssr73407	transcription start site region 73407	646 bp upstream
Tssr73408	transcription start site region 73408	617 bp upstream
Tssr73409	transcription start site region 73409	596 bp upstream