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rs260700020 SNP Detail
Summary
  • ID
    rs260700020
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385279 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGAAGCCA AGTTTCTACA
CAATCCAAGG AGGAAACTAA AGCAATGGAT GGAGCCAACA CCATGCGGAT CCCTGGCAGA
TGTTCCCCAA GGGCTTCATC TGGAAATGCA CCTCTTAGCA GCTACTTACA GACACTGCCC
CTCAACCTCA CTAGTTCCTG CCCAGCCACG AAAGAAACTG GCAACCCAGG CAACACCTCG
K
GTCCTTCGAT TATTTTCTAA GTGAAATAGT TTCATGTTCC AAGTGAAGAT TTTGCTTATA
TTTTCATAGT TTCACACCAT ATCTGTCCCC GACAAATGTC AGCTGTTTAG TTATCAGTTC
TAGGCACATT GAACACGAAG ACTTTTTCCA TGAAAAAATC TTCAGTTACC AAAAGCTAAA
ACCCTCCCCT AGCACAGACC                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552108 MGP_WTSI_19_44471330 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260700020 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552108 MGP_WTSI_19_44471330 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385279 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 315 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 165 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 273 bp proximal
Rr548237 regulatory region 548237 1422 bp distal
Rr548238 regulatory region 548238 29 bp proximal
Rr548239 regulatory region 548239 1874 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 476 bp upstream
Tssr156606 transcription start site region 156606 414 bp downstream
Tssr156607 transcription start site region 156607 93 bp downstream
Tssr156608 transcription start site region 156608 301 bp upstream
Tssr156609 transcription start site region 156609 511 bp upstream
Tssr159449 transcription start site region 159449 1983 bp upstream
Tssr159450 transcription start site region 159450 1969 bp upstream
Tssr159451 transcription start site region 159451 1889 bp upstream
Tssr159452 transcription start site region 159452 1595 bp upstream
Tssr159453 transcription start site region 159453 1526 bp upstream
Tssr159454 transcription start site region 159454 1507 bp upstream
Tssr159455 transcription start site region 159455 1201 bp upstream
Tssr159456 transcription start site region 159456 1082 bp upstream
Tssr159457 transcription start site region 159457 1053 bp upstream
Tssr159458 transcription start site region 159458 1019 bp upstream
Tssr159459 transcription start site region 159459 927 bp upstream
Tssr159460 transcription start site region 159460 891 bp upstream
Tssr159461 transcription start site region 159461 830 bp upstream
Tssr159462 transcription start site region 159462 798 bp upstream
Tssr159463 transcription start site region 159463 759 bp upstream
Tssr159464 transcription start site region 159464 729 bp upstream
Tssr159465 transcription start site region 159465 709 bp upstream
Tssr159466 transcription start site region 159466 691 bp upstream
Tssr159467 transcription start site region 159467 627 bp upstream
Tssr159468 transcription start site region 159468 381 bp upstream
Tssr159469 transcription start site region 159469 316 bp upstream
Tssr159470 transcription start site region 159470 302 bp upstream
Tssr159471 transcription start site region 159471 269 bp upstream
Tssr159472 transcription start site region 159472 243 bp upstream
Tssr159473 transcription start site region 159473 224 bp upstream
Tssr159474 transcription start site region 159474 202 bp upstream
Tssr159475 transcription start site region 159475 155 bp upstream
Tssr159476 transcription start site region 159476 137 bp upstream
Tssr159477 transcription start site region 159477 128 bp upstream
Tssr159478 transcription start site region 159478 107 bp upstream
Tssr159479 transcription start site region 159479 89 bp upstream
Tssr159480 transcription start site region 159480 57 bp upstream
Tssr159481 transcription start site region 159481 within coordinates
Tssr159482 transcription start site region 159482 79 bp downstream
Tssr159483 transcription start site region 159483 170 bp downstream
Tssr159484 transcription start site region 159484 204 bp downstream
Tssr159485 transcription start site region 159485 330 bp downstream
Tssr159486 transcription start site region 159486 337 bp downstream
Tssr159487 transcription start site region 159487 418 bp downstream
Tssr159488 transcription start site region 159488 435 bp downstream
Tssr159489 transcription start site region 159489 489 bp downstream
Tssr159490 transcription start site region 159490 591 bp downstream
Tssr159491 transcription start site region 159491 626 bp downstream
Tssr159492 transcription start site region 159492 677 bp downstream
Tssr159493 transcription start site region 159493 703 bp downstream
Tssr159494 transcription start site region 159494 723 bp downstream
Tssr159495 transcription start site region 159495 841 bp downstream
Tssr159496 transcription start site region 159496 911 bp downstream
Tssr159497 transcription start site region 159497 924 bp downstream
Tssr159498 transcription start site region 159498 936 bp downstream
Tssr159499 transcription start site region 159499 966 bp downstream
Tssr159500 transcription start site region 159500 997 bp downstream
Tssr159501 transcription start site region 159501 1012 bp downstream
Tssr159502 transcription start site region 159502 1048 bp downstream
Tssr159503 transcription start site region 159503 1061 bp downstream
Tssr159504 transcription start site region 159504 1140 bp downstream
Tssr159505 transcription start site region 159505 1253 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory