rs260702729 SNP Detail

Summary

• ID
  rs260702729
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49427600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTTTCAA CTTCACAATA CTTTGTCCAG
  GAACTCCTTC CCCCTCTGCT TCAGCTAGCA GCAGATCTAA AAAGAAACCA TTGCTTACAC
  AAATATAAGC CTCTGAGTAA ACAGTGCATG TTTTGTTGAA CAAGCCTGAT ATACATATGT
  K
  TGTGCATTCT GATATATAGC CCCATCTCAC CATAAAGAAC AAGTAAAATT ATTTAAAGGG
  ATTCAAACTT GCTTTTTCGG GAATTGCAAA TAACCTTTGC ATCAGGAAAC TAGTTTTAAT
  ATTATTTCAA ACTATATGCT ATGTTTTTAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324031621	CHEV_12_50481804	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260702729					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49427600 () rs orientation: forward

Symbol	Name	Function Class
Gm34304	predicted gene, 34304	within coordinates
Gm56518	predicted gene, 56518	within coordinates
Rr465759	regulatory region 465759	1099 bp proximal
Tssr113389	transcription start site region 113389	1157 bp upstream
Tssr113390	transcription start site region 113390	1240 bp upstream
Tssr113391	transcription start site region 113391	1835 bp upstream
Tssr113392	transcription start site region 113392	1859 bp upstream
Tssr113393	transcription start site region 113393	1974 bp upstream
Tssr116231	transcription start site region 116231	1007 bp downstream