rs260708330 SNP Detail

Summary

• ID
  rs260708330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166903400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCAAAT AAGTGCTAGA
  GAAGGCGAGG GAAGAGTGGC AGGAGCAGGC GGGGAGGGCA AGTAAGGCAG GGAGGGCAAG
  CAAGGCAGGG AGGGCACCAG ATCAGCAATG GTTAAGCTGT TGCAGGGATA ACATTTAGAG
  ACTTCTAATT ACAGGGTAAG ATGAAAGAGG ATGGAGCAAG AGGTGGCAGC TGGGTTGTAG
  Y
  TAGGTAAATT TCAAGTCCCG AGAGAAGTCG CCACACCATA CATCCCTCAG AGAAACACTG
  TAAGGTTACA GAAAGCAGGA GAGATCTGGG GGGGACTCAG AGGTAGGGCA GGGCCTAGGG
  ATGGGGAGCC CAGGGTGGTT GTGGAACAAG TGGGTATAGC AATAGGTGAG AAATGGAGAG
  AGTGGGGCTC CAGGGACCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497134	MGP_WTSI_2_166886980	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260708330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497134	MGP_WTSI_2_166886980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166903400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	640 bp proximal
Gm25878	predicted gene, 25878	1993 bp upstream
Gm56406	predicted gene, 56406	1536 bp upstream
Gm75600	predicted gene, 75600	367 bp downstream
Rr397500	regulatory region 397500	1650 bp upstream
Rr570436	regulatory region 570436	1126 bp distal
Rr570437	regulatory region 570437	918 bp distal
Rr570438	regulatory region 570438	706 bp distal
Rr570439	regulatory region 570439	within coordinates
Rr570440	regulatory region 570440	411 bp proximal
Rr570441	regulatory region 570441	1525 bp proximal
Tssr21786	transcription start site region 21786	933 bp downstream
Tssr21787	transcription start site region 21787	191 bp downstream
Tssr21788	transcription start site region 21788	178 bp downstream
Tssr21789	transcription start site region 21789	1335 bp upstream
Tssr21790	transcription start site region 21790	1733 bp upstream
Tssr27731	transcription start site region 27731	1411 bp upstream
Tssr27732	transcription start site region 27732	1353 bp upstream
Tssr27733	transcription start site region 27733	1306 bp upstream
Tssr27734	transcription start site region 27734	1050 bp upstream
Tssr27735	transcription start site region 27735	1024 bp upstream
Tssr27736	transcription start site region 27736	644 bp upstream
Tssr27737	transcription start site region 27737	633 bp upstream
Tssr27738	transcription start site region 27738	588 bp upstream
Tssr27739	transcription start site region 27739	404 bp upstream
Tssr27740	transcription start site region 27740	1078 bp downstream
Tssr27741	transcription start site region 27741	1127 bp downstream
Tssr27742	transcription start site region 27742	1252 bp downstream
Tssr27743	transcription start site region 27743	1384 bp downstream
Tssr27744	transcription start site region 27744	1501 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	1454 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates