rs260708626 SNP Detail

Summary

• ID
  rs260708626
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170036360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACCTCC CTCCTTGCTG
  GCCTCAAGAG TATCCTCATA AATATGTACA TGTGTGTATG CATGTATGTA TACATATAGA
  CATACGTATG TAGTATATAT ATATATAATA TATTATATAA TTTAAAAAAA GATTTAATTT
  TTAATCTGGG CATGGTGGTT TATGCATTTA ATCTCAGCAG AGGCAGAGGC AGAGTCAGGA
  M
  GATCTCTGTG TTGAGGCCAG CCTGGGCTAC AGAGTGAGTT CCAGCCTGGG CTACACAAAG
  AAACCCTGTC TTGAAAAGCC AAAAAAAAAA GATTTAATTT TAAACATTAT TATTATTTAT
  TTCAGTGTAT GGATGGATGG ATGTGCATAT GTGCGCTCGC TCATGCACAT GAAGCCATGG
  CCTAAGTGTG CAGAGTTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356575525	MGP_WTSI_2_170019940	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260708626					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356575525	MGP_WTSI_2_170019940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170036360 () rs orientation: forward

Symbol	Name	Function Class
Gm17619	predicted gene, 17619	387 bp upstream
Gm75167	predicted gene, 75167	within coordinates
Rr374260	regulatory region 374260	152 bp downstream
Rr571357	regulatory region 571357	1344 bp distal
Rr571358	regulatory region 571358	270 bp distal
Rr571359	regulatory region 571359	135 bp distal
Rr571360	regulatory region 571360	567 bp proximal
Rr571361	regulatory region 571361	1163 bp proximal
Tssr27915	transcription start site region 27915	976 bp upstream
Tssr27916	transcription start site region 27916	376 bp upstream
Tssr27917	transcription start site region 27917	1410 bp downstream