rs260709722 SNP Detail

Summary

• ID
  rs260709722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11322248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGAGCAG CCCGGAGTCT
  CCCAAACCTC CGAGTATCCA AACCCCGCGG CCGCCCCGGC CAGCTCCCGG CTGCCGCGCC
  CCCACTTCCT GACCCGCCCC CCTCTGGTGT CTCCGCCAAC TGGGTCCCTC CAAGGCGCTC
  CGGGAACCAG AGTGCAGGGA GCGGGGCCCG GCCGGAGCGT TTCGCTAGAG CGCCTCAGCC
  R
  TGCCCACGAT GGCCACGGGA TGGCAATGCT CCTGGGAGGA GCGAGTCCCC GCCGCCGCCC
  TCGCTCCTTG CTGAGCCTCA CAGGAAAGCA GGAGCCAGAG CAAGCTTTTC GTGACGCTGG
  GATCCGTCTC AGAAAGTCAT AGACTGTAGG CCAGATCCAG TCCCTATGTC CGGCCGATTT
  TTCAAACAGA AAACGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360594889	MGP_WTSI_4_11249395	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260709722					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360594889	MGP_WTSI_4_11249395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11322248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	within coordinates
Dpy19l4	dpy-19 like 4	111 bp upstream
Gm26663	predicted gene, 26663	within coordinates
Rr588912	regulatory region 588912	273 bp distal
Rr588913	regulatory region 588913	within coordinates
Rr588914	regulatory region 588914	89 bp distal
Rr588915	regulatory region 588915	9 bp proximal
Tssr36477	transcription start site region 36477	335 bp downstream
Tssr36478	transcription start site region 36478	311 bp downstream
Tssr36479	transcription start site region 36479	within coordinates
Tssr40926	transcription start site region 40926	159 bp upstream
Tssr40927	transcription start site region 40927	102 bp upstream