rs260712221 SNP Detail

Summary

• ID
  rs260712221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187994120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTGAA CAAAGCCAAA
  GAGAAAATTC CATCAATTGG CCAGCCTCAT GCTGGCTCCT TCCTCCCAAA GAGGGAACAT
  GCAGAACTGC AGAACGACCC ATATAGTTGC TGTCTTATAG AATCAGGCCT TTGTGATTAA
  AGCATCGCAT GGAGTAAGAT TCATAAAAGC AGGGAAAGGG AGGGGCCTGG CAGGGTATTA
  Y
  AGGATAAGGT GTACTGCTAC TTTAAAAATT AAGCATGCAT GCCCCACCTG ACTCCCTCCC
  ACTGTACCAG CTTGAAAGCC TTGAAAGCCA GGACACCTCA GTTGCTGAGG GGCCACCGAA
  CAGCCTACAC TGAGCTACAG GTAACCCTTT TGAGCTCTGG GGAAGAGTGG CCTGAGTGAC
  AAGTCTCACT CAGGGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320187308	CHEV_1_190085802	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260712221					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187994120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	1294 bp proximal
Tssr368	transcription start site region 368	976 bp upstream
Tssr10680	transcription start site region 10680	58 bp upstream
Tssr10681	transcription start site region 10681	94 bp upstream
Ush2a	usherin	915 bp upstream