rs260714963 SNP Detail

Summary

• ID
  rs260714963
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99141288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTAGCT AAGTGACTTA
  GACAGGTAAA CGTTTTATTA CACAGCAACC CTAAATACCT CCTAAGATCA AGTCTTAATC
  CCCCAATGCC CTTCCCCCTC CGCTGCCTGG AGAAAGCAGA AGAACAGTTG GGGCTGGCCC
  CCAGCAGGAT ACCTGCTTAG TTGGCAAAAA GCAAGCAATA AGATCTTCAG TTCCACCTGG
  S
  GGTGGTGGCA CACACCTTTA ATCACAGCAC TCGGGAGGCA GAGGGAGGCG GATTTCTGAG
  TTCGAGGCCA GCCTGGTCTA CAAAGTAAGT TCCAGGACAG CCAGGGCTAT ACAGAGAGAC
  CCTGTCTCAA AAAAAAAAAA AAAAAAAAAA AGAAAGATTT CCTATTCATT TATTCCTGTT
  GGGTGGCTAA GCCAGAAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135181	CHEV_9_99159654	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260714963					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99141288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep70	centrosomal protein 70			Intron
				Noncoding-Transcript-Variant
Gm18914	predicted gene, 18914			1710 bp downstream
Gm47199	predicted gene, 47199			240 bp downstream
Rr383815	regulatory region 383815			1485 bp downstream
Rr685374	regulatory region 685374			1921 bp distal