rs260739628 SNP Detail

Summary

• ID
  rs260739628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:78796004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACGGAGG GCTGTTGCTT
  GGGCTGCGTT GAGGAGCGAG GGAGGGAGAG AGGATCGGCG GCCGCCGGGG CTTGGAGGTA
  AGGGGCGGAC CCGCAGCGCC CGGGCTGTGG CGATCTTAAT CAACAGGTTC CCGGGAGCGC
  GGCGGGGGAG GGGCGGCGGG GCTCGCACCC CCTCCCAGAC CCGCCGCACC GCCAGGGTTC
  Y
  CTGGGGAGAG CCCCAGGCTG AGCCGGGCGC CGCGGTGGCA GCCCAACCTT TGTCCCTCGG
  AGGGACGCTC CCCGCGCGAT GCCGGTTGGT TCCCTGGGCC GGGGGGTGGG GGTGGGGGGG
  ACGCACCTTG GCGCGGTGGC GGGCCACCCC GCCGGACTTG CCGGGGGCAC GGCAGGGAGT
  CGTCTCGCTG CGCCCAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386596272	MGP_WTSI_12_79850217	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260739628					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386596272	MGP_WTSI_12_79850217	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78796004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4794	CpG island 4794	within coordinates
Gm60106	predicted gene, 60106	within coordinates
Pals1	protein associated with LIN7 1, MAGUK family member	Intron
Rr403364	regulatory region 403364	374 bp downstream
Rr468462	regulatory region 468462	228 bp distal
Rr468463	regulatory region 468463	within coordinates
Rr468464	regulatory region 468464	340 bp proximal
Tssr114060	transcription start site region 114060	310 bp downstream
Tssr114061	transcription start site region 114061	259 bp downstream
Tssr114062	transcription start site region 114062	211 bp downstream
Tssr114063	transcription start site region 114063	189 bp downstream
Tssr116791	transcription start site region 116791	359 bp downstream