rs260745866 SNP Detail

Summary

• ID
  rs260745866
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTGGC GGGCCTGCTT
  ATTCTTGTTA TGGTCCCCAC ACCTCTGCCC GGTCACCCCA GTGGAAAGCA GATGTTGTGA
  GGTCAAGGCG CTTCAGGAGG AGGCAGCGGC GGCAGCAGTA CTGCTCTGTC AGGCTTTGGG
  ACAGAGACTC CAGGGCTTCC TGGAAGGAAA GGTCTTGGTC ATGCCCAGGG TCCCGTCTCT
  S
  GGTAGATACT GTTCACAGCC ATCTGCACAT GTTCTCACCC ATCGGGATGC ATCCAGCTGC
  GAGTTAAGGA GGGGCTTCAT GGACTCCGGG GGCAGGGACG GCAGCAGCTC AGAGATCTGG
  TGGGAGAATC ATTAGAAGCC AGTGAGACAC AAACAGGATG GACCTTCTCA GGGGCTCTAG
  TTTCCCTCAA CCCTGTGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370876331	MGP_WTSI_7_29939596	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260745866					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370876331	MGP_WTSI_7_29939596	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854002 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1103 bp upstream
Cpgi18740	CpG island 18740	722 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1876 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	616 bp downstream
Rr400219	regulatory region 400219	1535 bp upstream
Rr644490	regulatory region 644490	349 bp distal
Rr644491	regulatory region 644491	613 bp proximal
Rr644492	regulatory region 644492	1125 bp proximal
Rr644493	regulatory region 644493	1596 bp proximal
Rr644494	regulatory region 644494	1619 bp proximal
Rr644495	regulatory region 644495	1744 bp proximal
Tssr65599	transcription start site region 65599	1066 bp upstream
Tssr65600	transcription start site region 65600	1094 bp upstream
Tssr65601	transcription start site region 65601	1167 bp upstream
Tssr71610	transcription start site region 71610	1020 bp downstream
Tssr71611	transcription start site region 71611	1045 bp downstream
Tssr71612	transcription start site region 71612	1140 bp downstream
Tssr71613	transcription start site region 71613	1359 bp downstream
Tssr71614	transcription start site region 71614	1386 bp downstream
Tssr71615	transcription start site region 71615	1595 bp downstream