rs260746405 SNP Detail

Summary

• ID
  rs260746405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70819824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGACAT ATTGCTATAT
  CGTCAGTAGA GCACCATTCA CCCTCATCAG AGAAGCGGCT TCTTGCAATA AAGACAGAAA
  TTAACAAAGA GATCCTCAAC TGAACAATAT ACAGAAAGTT GGGTACTCTG GAGCTCTCAG
  TCCTAAATAG GATATCTGTA TCAAACCTCT CCCCACAAGG CTGTGTTTTG CACAGAAAAG
  R
  TGGGAAGATT GTCAGAGTCA TAGGTAGCAG GTAACTCCAA GGGAAGAGTT TCTTCCAGAC
  ACAACAGTAC CAGTATACAT ACGAGCTTAA AATGGAATCT TTAAAAATAA ATAAAAAGAG
  AAAGGGACCA TATGAGCAGA GGAAAGTTCA CATGAAGAAG CAATAGAGTA GCCATCTAAC
  AAACCAAAAG GGGCCTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321816166	CHEV_6_70792834	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260746405					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70819824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17515	CpG island 17515	1304 bp proximal
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	1675 bp upstream
Rr631844	regulatory region 631844	1185 bp proximal
Tssr56977	transcription start site region 56977	1659 bp upstream
Tssr56978	transcription start site region 56978	1743 bp upstream