rs260752239 SNP Detail

Summary

• ID
  rs260752239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131673339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTGACCT TGTACAGGTC TCACTGTTAG
  ACTCTGTTCA GCGTCTCACC TTACGGCCTC TACTGGAACT TAGCCCCAGG TCATCTGTTC
  TCAACAGGGA AAGCAGCAGG GTGGGTGGGC CTGGAGATAC AGAATGGAGA CTTGAGACTC
  M
  CACACAACAG GGAGTCCCCT TTAAAGGATG CAGTCCCAGA GCATCCACGG AGTCAACATT
  TGCCTTGAGG ACATCCTCCT CCACAACAGA GGAGGGCATC AGCCTGGGGT TAGAAAGGGA
  CTACAGATTT GCACCAGAAA TTCCATGACA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319975154	CHEV_1_133642178	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260752239					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131673339 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1080 bp proximal
Rr28486	regulatory region 28486	538 bp distal
Rr30434	regulatory region 30434	1417 bp proximal
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	1572 bp downstream
Tssr8661	transcription start site region 8661	1406 bp downstream