rs260754303 SNP Detail

Summary

• ID
  rs260754303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7164348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTCCAGG CCACCTTGCG
  TCTCTAGAGT CCCAGCCACT CCAGGGACTC TGGTCTTCTC TTCCTTCAAT GACTCCCAGC
  CAATTTGGCG TCCCGGACCC TATAGCCCCT CCCCCTGGAT GGCTGGCTAA GCTGGCCTTT
  CCAGGGATGG TTTATGTTTG GGAAGCTGGC CCGGACCCAT TCAGCGCCTG TGTACTTTGT
  R
  AAGTTCCCGC AATGGAATTC CTCGTGTAGG GTATGCTGTA TTAGGCATTT CCCAGCGAGA
  ACGCGCAGAT CACTTTGAGG TCTGGAGAAC CTTAGAGCTC GAGGTTTAAA TCTGCACCAC
  GGGCCACTTT AGCTCCCAGA GTCTCAGCAC CGCACAACCT CACGCTGACA GCTATGGGCG
  CAAAGGATTT GCTTTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382314164	MGP_WTSI_11_7114351	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260754303					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382314164	MGP_WTSI_11_7114351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7164348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	within coordinates
Igfbp3	insulin-like growth factor binding protein 3	mRNA-UTR
Rr442460	regulatory region 442460	1157 bp distal
Rr442461	regulatory region 442461	within coordinates
Rr442462	regulatory region 442462	576 bp proximal
Rr442463	regulatory region 442463	1393 bp proximal
Tssr106776	transcription start site region 106776	927 bp upstream
Tssr106777	transcription start site region 106777	894 bp upstream
Tssr106778	transcription start site region 106778	733 bp upstream
Tssr106779	transcription start site region 106779	525 bp upstream
Tssr106780	transcription start site region 106780	489 bp upstream
Tssr106781	transcription start site region 106781	419 bp upstream
Tssr106782	transcription start site region 106782	358 bp upstream
Tssr106783	transcription start site region 106783	169 bp upstream