rs260759416 SNP Detail

Summary

• ID
  rs260759416
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGACAAG ATCCAAAGGG
  GGGTGGGGGG GGGGGAGATC CAAAATTGAC ACCCGATTGG AAACGCCCCC TGACTTGTGC
  AATCTTCCTG CCCGGTAGTT CCGCCAAAAA CAAAACAGTC CAAACGCTAG CCTGGGGGCA
  GGCGCACGCA GGAGTTTTCC CTCTGCAGGA ATGACCCGAA AGAAAAGGGG CGCCGCTCCC
  G
  GAGGTGGCCC GATCGGCTGA GGAGCCCAGG GCTCCTCCTC GGCCCTGGGC GGGAGAAATC
  CCGCGCCCGG CGCTGCCCGC TCCCCTCCTC GGGGGAAGGG CGACTCCACA ACTTTGTGCG
  CGAGAGCTGC TCGCCGCTCC GGCTCCTCCT CCAGGTCCTC CTCCGGCTGC CGCCGGCCCC
  TTTGTTGGAG AGCGAGGGTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323253698	CHEV_10_12588858	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260759416					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1331 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	382 bp downstream
Tssr92368	transcription start site region 92368	628 bp downstream
Tssr92369	transcription start site region 92369	79 bp downstream
Tssr96723	transcription start site region 96723	873 bp upstream
Tssr96724	transcription start site region 96724	833 bp upstream
Tssr96725	transcription start site region 96725	756 bp upstream
Tssr96726	transcription start site region 96726	24 bp downstream
Tssr96727	transcription start site region 96727	84 bp downstream
Tssr96728	transcription start site region 96728	429 bp downstream
Tssr96729	transcription start site region 96729	570 bp downstream
Utrn	utrophin	within coordinates