rs260760978 SNP Detail

Summary

• ID
  rs260760978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71062157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGCGTC GGGAAGCATC
  CAGGCTAAGG CTTGCTATCG CTGCAAGTGT CCCCGGTTGG ACACGACGGG TTTAGTGGGG
  ACTTGCTGGA GATTGCGCAC AGGTGGGTCG TCAGCACCCG GTGGCGCAGT CATGAGCTCA
  GGTTTCCTGT GTGAGTGTGA CAGCATGCAG GTCACCACGG CGCTAAGTCT CGCGTGGTGT
  Y
  CCTGGTGCAG GCAGATCCCC TAGCCCGGGC CTCCCCGCCC CCACCCTAGT GGGCGGGCGG
  GAAGCCGAGC CGCCGTGGTT CCAGGCGCTC AGGAAAGGCT GCCGGGGCGC GCCCCGCCTC
  CTCCCCCAGG GCTCAGCTGG GCCGACGCCG GCCTTTCCCA TTTCCTGCTT GGCCCGCCAC
  CCCCTCCCCC AGCTTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375103108	MGP_WTSI_8_73133406	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260760978					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375103108	MGP_WTSI_8_73133406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71062157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	740 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	1405 bp proximal
Gm45546	predicted gene 45546	918 bp upstream
Gm63790	predicted gene, 63790	886 bp upstream
Rr400904	regulatory region 400904	1337 bp upstream
Rr664832	regulatory region 664832	1204 bp distal
Rr664833	regulatory region 664833	703 bp distal
Rr664834	regulatory region 664834	1055 bp distal
Rr664835	regulatory region 664835	145 bp distal
Rr664836	regulatory region 664836	396 bp proximal
Rr664837	regulatory region 664837	897 bp proximal
Rr664838	regulatory region 664838	1422 bp proximal
Ssbp4	single stranded DNA binding protein 4	1073 bp upstream
Tssr77777	transcription start site region 77777	883 bp upstream
Tssr77778	transcription start site region 77778	1192 bp upstream
Tssr81636	transcription start site region 81636	1177 bp upstream