rs260773560 SNP Detail

Summary

• ID
  rs260773560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56808986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTTTGA AATGGTGTAA
  GATTACAGGA GCATTTGTAG GTCTAAATTA TCTATCCTGT TGCTGCTTTT AAAATAAATA
  CTAAATAAAA CTATTGTAAA TGAAGTGATG TTTATGAGAA AAATCAAAAC CTGACCTTAG
  TCATTTAAAG ACAAAAAAAA TAAAAGAAAA ATTTTAGTTT TATTATTAAA AACAAACAAA
  Y
  AAACAAAGCA GAATTTGAAG TTGAATATTC TTTCTTTACA GTGAGTTGAA TGACTTTTGT
  AAACCAGGGT AGATGCTGTC AAACGGAAAG ACAGTTTTCT CAGTGAGGCT GCCTGGGCTC
  CCAACCATCA CAGCTTCCTC AGAGAGCTGG GCTGAGTGTT CTGTTCATCA CAGTCACTTT
  CAGGACTGAA CACACTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859374	CHEV_19_56895044	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260773560					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56808986 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1352 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	1083 bp proximal
Rr406045	regulatory region 406045	1563 bp upstream
Rr550140	regulatory region 550140	862 bp proximal
Rr550141	regulatory region 550141	1363 bp proximal
Rr550142	regulatory region 550142	1626 bp proximal
Tssr157215	transcription start site region 157215	1374 bp upstream
Tssr159886	transcription start site region 159886	1526 bp downstream
Tssr159887	transcription start site region 159887	1607 bp downstream