rs260773624 SNP Detail

Summary

• ID
  rs260773624
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49013135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGGGT AAGTGGGACC
  TACCCAAGTG ACTTGGGGAT AGGATAGTGG GAATGGGAGG GAAACATTCC ACTCACTGGA
  AGCAGACTAG GGGAAAGTAT GGCAGTGTGG GAAGAGTATG AAGTACTGAA GGAGCTGAAG
  AAAAATTCAA TGTGGTATAC ACAGTGTATA TTCAGACAGG GACAGCAAGA CACTGTGCAA
  G
  GAGTGCAGCT TCCTGTGCTA ATTCCAGATC TCTTAAGAGA AAGAACCAAA TTTTGTCCCT
  TTCATGAGTT AATGAATACC TGAGGGCTGA ATATAAATAA TGAAGTTTAA TGTTTGAATG
  GACAAAACTC ATGGGGGTAA AAAATGTTTA TAGAAGTCCC TAAATATGAT CAAGCCTTTT
  ATTATTGAGG TAGGGAATAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ
ss398377937	MGP_WTSI_17_48845432	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ
rs260773624					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398377937	MGP_WTSI_17_48845432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49013135 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	205 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	205 bp proximal
Rr392702	regulatory region 392702	847 bp upstream