rs260777391 SNP Detail

Summary

• ID
  rs260777391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62488210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATCAT GTTCTCTTTA
  TTCAGTCAAT CAGCTATTAC ATTCCTGAGG GAAGATGACA CCAAACCTAG ATGTAGGTAC
  AGGGCATTCT TGCAAACTAC ATAATGTCTA GTGTAGCAGT CTTGTAATCT GAGCCTCAAA
  CACAGGCCTT AAAAAAATTA CAGCTACACG TCCTGAGTTC TATGATTAGA CTTAAATAAC
  Y
  GGGACCACAA TATTTTAAAT TTGTGATAGC TTCCAGAATT CTATGAAAAT AAGGACTGGC
  TTAACATCAA TGACTTTGTC TGAATGTAGT CTTATGGATT CAGTTTTATA ACACCAGGTG
  TGTTCAAGGA ATGATGGTGA AAAAGGCTTT TCCCACAAGT TGGATGAATA GTTATGGGTC
  TCTACATCTA AATCTTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380622858	MGP_WTSI_10_62115179	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260777391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380622858	MGP_WTSI_10_62115179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62488210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1632	CpG island 1632	518 bp distal
Ddx50	DExD box helicase 50	1213 bp upstream
Gm66017	predicted gene, 66017	within coordinates
Rr369004	regulatory region 369004	946 bp downstream
Rr432661	regulatory region 432661	1224 bp distal
Rr432662	regulatory region 432662	766 bp distal
Rr432663	regulatory region 432663	43 bp distal
Tssr93725	transcription start site region 93725	754 bp downstream
Tssr93726	transcription start site region 93726	725 bp downstream
Tssr93727	transcription start site region 93727	705 bp downstream
Tssr97868	transcription start site region 97868	1239 bp upstream
Tssr97869	transcription start site region 97869	1197 bp upstream