rs260777413 SNP Detail

Summary

• ID
  rs260777413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45868019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCTCAC TTCCTCCTCT
  GCTGAGAAAA GGGAAGTAAT GGCTTGGCCT CAGCCTCCCC AACAGTTACC TCCTGAGCTC
  CCCAAATTCT TCTTGCTGTC CCATCTCTTG ATCTCCCTTT TCTCCCTTAG GTCCAGCTGG
  AATCAGGTGC AGCTGGACTG TGAGGCTATC AAGTGTGTAG GTGTCAAGTG CAGAAGAGGT
  S
  ACTGGGCTTT GTGGGTGTTA GAGCAGGGGC AGCTGGAGTG CTAGCTAGAT GAGAGAGACG
  CTGGGATGCA GGGGGTACCT GTCCTGACCT GCTTGTTGGA GATGTAGGGG TCTTGGTTGG
  GTACTAGCAA AGATAGTCTC CATCCTGTGA GCAGGAGAGA GGCCTTTTGT ATTTCAGGCG
  CCAGTCACAA CCCTTAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398302219	MGP_WTSI_17_45694042	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260777413					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398302219	MGP_WTSI_17_45694042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45868019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	777 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	1216 bp upstream
Rr405302	regulatory region 405302	1320 bp downstream
Rr527428	regulatory region 527428	1372 bp distal
Rr527429	regulatory region 527429	within coordinates
Tssr144787	transcription start site region 144787	1420 bp downstream
Tssr144788	transcription start site region 144788	1379 bp downstream
Tssr144789	transcription start site region 144789	1347 bp downstream
Tssr144790	transcription start site region 144790	1294 bp downstream
Tssr144791	transcription start site region 144791	1276 bp downstream
Tssr144792	transcription start site region 144792	1193 bp downstream
Tssr144793	transcription start site region 144793	823 bp downstream