rs260777658 SNP Detail

Summary

• ID
  rs260777658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117662267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATTGTC AAGAAGCCTA
  GGGGAGGGGG AGGAGCTGGG GGGGGGGGAG GGAGAAGCAG TTTCAGGCCA CCCGCACACG
  GTGAGGAATG TCGCTGTCAA GCAAGGAAAA ATGGAAAGAC GAAGAGAGAA AAAAAAAATC
  AGAACTTTTC AGACTCCATG AGCCTTGGCC CTGCCACTGA TAAAAGTGAA GAGGAGGGAA
  Y
  GACTAGTTCA GCCTTGGAGG TACTGTCCCC AGCTCCAGCT CCATTGGAGA GTTGAGTCAC
  CCTGGAACTT TCCCTGGACA GGCAGTCCCC GCCACCACGG CCATGGCCAC GTCCCCTGCC
  CTCACCTTAC TGAACACCTC CAGGTCGTCC TCGTCCTCGT CCAGATCCAG CACATCGGCC
  TGCAGCAGGC TGCAGGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359390999	MGP_WTSI_3_117571536	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260777658					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359390999	MGP_WTSI_3_117571536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117662267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	within coordinates
Gm56798	predicted gene, 56798	399 bp upstream
Rr583874	regulatory region 583874	1324 bp distal
Rr583875	regulatory region 583875	308 bp proximal
Rr583876	regulatory region 583876	558 bp proximal
Rr583877	regulatory region 583877	572 bp proximal
Snx7	sorting nexin 7	Intron
Tssr31404	transcription start site region 31404	402 bp upstream
Tssr35382	transcription start site region 35382	287 bp downstream
Tssr35383	transcription start site region 35383	312 bp downstream