rs260778362 SNP Detail

Summary

• ID
  rs260778362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115079740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTCCAG GCCAGTTCTC
  CTTTTAGACA CCTATCAGAG AGCATCAAGC CAAATAGTAG TTAACTTGCT AGTCTCCCAT
  AATATCTATC TCAGGACTCC CACAGATGAC ACACAGTTCT GCCAGTCAGC TGGGCAGTCA
  CCAACAGCTG TCGCCATGGA GTTGTGTTCC TCTCAGTAGT CAGCAGCCTC TTTCTTCCTT
  Y
  GCTAAATTCT AAATTGCACA ACTCTTGTGG TCTTGGATGT TGAAAGAGGT GGTGAACTGC
  AGAGTCTCCC AATTGCAGTT TGGTAGAGCA TGCAATTATG ACAATTAGAG CGATTGATTC
  CCCTCTGTCT CGGCTCCGTG GCCCCTGCAC TCCCCCCACA CACACTCAGT TTATCTTCTC
  TCGGTGCTGT ATCCAGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384823275	MGP_WTSI_11_115050228	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260778362					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384823275	MGP_WTSI_11_115050228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115079740 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4111	CpG island 4111			947 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)			1058 bp upstream
Rr403112	regulatory region 403112			1411 bp downstream
Rr459794	regulatory region 459794			1417 bp distal
Rr459795	regulatory region 459795			1081 bp distal
Rr459796	regulatory region 459796			639 bp distal
Rr459797	regulatory region 459797			304 bp distal
Rr459798	regulatory region 459798			within coordinates
Rr459799	regulatory region 459799			419 bp proximal
Tmem104	transmembrane protein 104			Intron
				Noncoding-Transcript-Variant
Tssr3728	transcription start site region 3728			1343 bp downstream
Tssr3729	transcription start site region 3729			234 bp upstream
Tssr3730	transcription start site region 3730			663 bp upstream
Tssr105849	transcription start site region 105849			1352 bp downstream
Tssr111731	transcription start site region 111731			1630 bp upstream
Tssr111732	transcription start site region 111732			1596 bp upstream
Tssr111733	transcription start site region 111733			1555 bp upstream
Tssr111734	transcription start site region 111734			1078 bp upstream
Tssr111735	transcription start site region 111735			1046 bp upstream
Tssr111736	transcription start site region 111736			140 bp upstream