rs260780362 SNP Detail

Summary

• ID
  rs260780362
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170902030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGGCT GAGAGTTCAT
  CAGGTGATGG CAGGAGACAG GGCATGGGTG GTTCAGTGGT AGAATTCTCG CCTGCCACGC
  GGGAGGCCCG GGTTCGATTC CCGGCCCATG CAGAGTCCAG TCCCTTTTGG TCTTCACGCC
  CACATTGCCC TTGGACAGCC TGCGCTGTAC ACCACACCTC CTCCACATAC ACAGACACAC
  T
  CCACTGGGCC ACTGCACACA CACTCTGGCC TGTAAGCCTT GCCTCTCCTC ATTCTGACAA
  CTACCTAGAG CCTCCTTCAA ATCACTTGAC ACACTCAGCC TACCCACTCG CCTCCACCAA
  CAAGAAACTA CACACTCAGC CTACCCACTC GCCTCCACCA CCCTCTTATG CTTTCCCTTC
  TCCATCTTCT TCTCCAAGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	JF1/MsJ	MOLF/EiJ	ZALENDE/EiJ
ss352379508	MGP_WTSI_1_173004592	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	JF1/MsJ	MOLF/EiJ	ZALENDE/EiJ
rs260780362					SNP	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352379508	MGP_WTSI_1_173004592	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170902030 () rs orientation: forward

Symbol	Name	Function Class
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	1397 bp upstream
n-TGgcc13	nuclear encoded tRNA glycine 13 (anticodon GCC)	89 bp downstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	760 bp downstream