rs260788508 SNP Detail

Summary

• ID
  rs260788508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88200088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTCCGGC ATCGCAAGCG
  CCGGCAGTTT CCTTCTTGGT TCTTGGGATG GTGTTTTGCT TCTGCGCCCG CGCTGGTAGG
  AGCTATGCGC CCTACCCGCC TACCTCGTGC ACTTGTCCAC GGTAGATTTA AACCACACAC
  GAATTCGAAA AACAAAGTGA AACTACATCC ACGCCCAGTG GGAGATGAGG TGAGGAGCTG
  Y
  GGGGGTGGGC CGGTCCCGCA CCTCACGGCA GGAACGCAGA CAGGTAGGCC GAGGCCGCTT
  GCATGGAATC CAGACCAAGC GGGCAGGGTC GATGTGCTGG AGCTCATCAG AGGCCACCCG
  CTGCGGGAGC CTCTCTCGCT GCAGCGATGC AGGCCATGGG CTCTCGGTGC CGAGGTGGCC
  TCCGGGGTAA GGCAGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375466027	MGP_WTSI_8_89997359	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260788508					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375466027	MGP_WTSI_8_89997359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88200088 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	868 bp upstream
Cbln1os	cerebellin 1 precursor protein opposite strand	within coordinates
Cpgi20772	CpG island 20772	within coordinates
Gm27016	predicted gene, 27016	1829 bp downstream
Rr666962	regulatory region 666962	133 bp distal
Rr666963	regulatory region 666963	938 bp distal
Rr666964	regulatory region 666964	485 bp distal
Rr666965	regulatory region 666965	399 bp distal
Rr666966	regulatory region 666966	within coordinates
Rr666967	regulatory region 666967	810 bp proximal
Tssr2634	transcription start site region 2634	931 bp upstream
Tssr78595	transcription start site region 78595	678 bp downstream
Tssr78596	transcription start site region 78596	666 bp downstream
Tssr78597	transcription start site region 78597	638 bp downstream
Tssr78598	transcription start site region 78598	611 bp downstream
Tssr78599	transcription start site region 78599	580 bp downstream
Tssr78600	transcription start site region 78600	566 bp downstream
Tssr78601	transcription start site region 78601	550 bp downstream
Tssr78602	transcription start site region 78602	297 bp downstream
Tssr78603	transcription start site region 78603	203 bp downstream
Tssr78604	transcription start site region 78604	62 bp downstream
Tssr78605	transcription start site region 78605	42 bp downstream
Tssr82314	transcription start site region 82314	1327 bp upstream
Tssr82315	transcription start site region 82315	1264 bp upstream
Tssr82316	transcription start site region 82316	1199 bp upstream
Tssr82317	transcription start site region 82317	1079 bp upstream
Tssr82318	transcription start site region 82318	889 bp upstream
Tssr82319	transcription start site region 82319	863 bp upstream
Tssr82320	transcription start site region 82320	846 bp upstream
Tssr82321	transcription start site region 82321	827 bp upstream