rs260792389 SNP Detail

Summary

• ID
  rs260792389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116252747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACTGAA AATATGCATC
  TCATCTGAAT GAGGCTTGGT TCTAGGTGGT AAATAGGGGC CGGGGGAGGG GATCGAATAT
  CTGCTGAGAC TCATGGTTGA TATTTGAAAC TCCGTCTATG AACAGATGCA AAGATGATGG
  ATGGCTTGGA TGCACTTGGA GTGTCACCAC AGAGCTCTGG CTGTCCTAGA ACTCCCTGTG
  W
  AGACCAGGCT GGCCTTGAAC ACAGAGAGAT CCCTGTGTGC TACCACGCCC AGCTTTGTCA
  CACTTTTGAA GGCACAGAAA GCCCAGCAGC AGTGGAGTGA GCCAAGCTGC ATCCTAGCTC
  TGTCTGAGCA AACTGAACTG CAATAGTCAT CCTGCTGTGA CACCCAGAAC ATGGGGGCAA
  GGACAAAGGC AAGGGAAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323488222	CHEV_10_115853898	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260792389					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116252747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2214	CpG island 2214	1330 bp proximal
Gm67349	predicted gene, 67349	within coordinates
Kcnmb4	potassium large conductance calcium-activated channel, subfamily M, beta member 4	1019 bp downstream
Kcnmb4os1	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	1279 bp upstream
Rr439316	regulatory region 439316	205 bp distal
Rr439317	regulatory region 439317	1306 bp proximal
Tssr95869	transcription start site region 95869	1206 bp upstream
Tssr95870	transcription start site region 95870	1275 bp upstream
Tssr95871	transcription start site region 95871	1297 bp upstream