rs260793624 SNP Detail

Summary

• ID
  rs260793624
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGC GGCGGCCGGA CGGGAGGGGC
  K
  GGACGGCAGC CAGAGACAGC CCCGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss643239360	FVB_NJ_12_109417483	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	T	T	T	T	G	G	T	T	T	T	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260793624					SNP	T	G	G	T	T	T	T	G	G	T	T	T	T	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643239360	FVB_NJ_12_109417483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145532 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	306 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	56 bp upstream
Rr472439	regulatory region 472439	68 bp distal
Rr472440	regulatory region 472440	within coordinates
Rr472441	regulatory region 472441	476 bp proximal
Rr472442	regulatory region 472442	630 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	776 bp downstream
Tssr114949	transcription start site region 114949	413 bp downstream
Tssr114950	transcription start site region 114950	139 bp downstream
Tssr114951	transcription start site region 114951	104 bp downstream
Tssr114952	transcription start site region 114952	270 bp upstream
Tssr114953	transcription start site region 114953	520 bp upstream
Tssr114954	transcription start site region 114954	635 bp upstream
Tssr117676	transcription start site region 117676	48 bp upstream
Tssr117677	transcription start site region 117677	within coordinates