rs260797973 SNP Detail

Summary

• ID
  rs260797973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92132017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTGAG TGAGCCGCAC
  AGTTCAAACC AAACCTGAAT GTTTTCTAGT TAAGGGTGGT ACTTTTTCAC AGACTGTAGT
  AAAAAGAAAG CAAAGACTGC TACCAGCAAA CGGCGTGAAA CGGTTATATA AAACCCATAA
  GATTTTTAAA AAGAGGAGAG AAATCTGCTA GGAAAGAGAT CAACAAACTT GAAAGTGCAA
  W
  CAGGGCTGAT GGAACAGATG TGGTAATCGA TGCATACTTA AGAAAGTGTG CAAAGCAGGA
  AAGTAAGTTT GAGGAAGCCC GATTTCCCGC ACAGTACCCA AATAGGTTGG GTGGTTGAGA
  TCAGGCAGTG TAAAGAAAGT TCCGAGAAGA GGCCACTCCC CAGGTGATGA ATAGCCTTTC
  TTTCCAAGGC AATCAAAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378468539	MGP_WTSI_9_92144802	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260797973					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378468539	MGP_WTSI_9_92144802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92132017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	247 bp proximal
Gm67683	predicted gene, 67683	within coordinates
Plscr1	phospholipid scramblase 1	248 bp upstream
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	within coordinates
Tssr86494	transcription start site region 86494	297 bp downstream
Tssr86495	transcription start site region 86495	275 bp downstream
Tssr86496	transcription start site region 86496	235 bp downstream
Tssr86497	transcription start site region 86497	211 bp downstream
Tssr86498	transcription start site region 86498	62 bp upstream
Tssr86499	transcription start site region 86499	75 bp upstream
Tssr86500	transcription start site region 86500	97 bp upstream
Tssr86501	transcription start site region 86501	119 bp upstream
Tssr86502	transcription start site region 86502	160 bp upstream
Tssr86503	transcription start site region 86503	201 bp upstream
Tssr86504	transcription start site region 86504	231 bp upstream
Tssr86505	transcription start site region 86505	332 bp upstream
Tssr90887	transcription start site region 90887	508 bp downstream
Tssr90888	transcription start site region 90888	546 bp downstream